SISG 2013
Most of the resources for the class are on Joe's page for SISG: http://evolution.gs.washington.edu/sisg/2013/
Datasets for the PAUP and MrBayes Labs can be found "https://phylo.bio.ku.edu/slides/sisg2013/paupmb/index.html
| 2013_SISG_13_1 Intro, parsimony, distances. |
Available as
2013_SISG_13_1.pdf (2 per page handout) or 2013_SISG_13_1_slidelayout.pdf (slide layout) |
| 2013_SISG_13_2 Searching for the best tree. | Available as 2013_SISG_13_2.pdf (2 per page handout) or 2013_SISG_13_2_slidelayout.pdf (slide layout) |
| 2013_SISG_13_3 Paup labs | Two versions back to back a "Short" version and a more in depth tutorial). We will start these on the afternoon of the first day of the module, but you'll need to return to them on the second day or in your own time to finish them (if you'd like to complete them). 2013_SISG_13_3.pdf |
| Models | |
| Likelihood | |
| Phylip | |
| More realistic models | |
| Bayesian phylogenetics | |
| MrBayes Lab 2013_SISG_13_9.pdf | MrBayes 3.2 for Ubuntu |
| Divergence time analyses | |
| Comparative methods, the coalescent, and the future |